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SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 1.2k 200

  2. sparql-llm sparql-llm Public

    🦜✨ Chat system, MCP server, and reusable components to improve LLMs capabilities when generating SPARQL queries

    Jupyter Notebook 130 24

  3. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 93 40

  4. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 89 31

  5. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 79 25

  6. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 76 20

Repositories

Showing 10 of 171 repositories
  • sparql-llm Public

    🦜✨ Chat system, MCP server, and reusable components to improve LLMs capabilities when generating SPARQL queries

    sib-swiss/sparql-llm's past year of commit activity
    Jupyter Notebook 130 MIT 24 3 1 Updated Oct 21, 2026
  • sequencing-data-analysis-training Public

    SIB course that introduces analysis of NGS data

    sib-swiss/sequencing-data-analysis-training's past year of commit activity
    Shell 18 CC-BY-4.0 16 4 0 Updated Oct 21, 2026
  • training_repos_traffic_tracker Public Forked from WandrilleD/track_multiple_repos_traffic

    some code to track the traffic on multiple github repos beyond the 15 days limit

    sib-swiss/training_repos_traffic_tracker's past year of commit activity
    Python 0 2 0 0 Updated Oct 21, 2026
  • single-cell-r-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    sib-swiss/single-cell-r-training's past year of commit activity
    HTML 9 CC-BY-4.0 2 1 0 Updated Oct 20, 2026
  • sparql-examples-utils Public

    Help maintain your SPARQL examples collection

    sib-swiss/sparql-examples-utils's past year of commit activity
    Java 7 5 4 1 Updated Oct 20, 2026
  • sib-swiss/cancer-variants-training's past year of commit activity
    HTML 13 CC-BY-4.0 4 0 0 Updated Oct 18, 2026
  • sib-swiss/single-cell-python-training's past year of commit activity
    HTML 6 CC-BY-4.0 3 0 0 Updated Oct 18, 2026
  • sib-swiss/spatial-transcriptomics-training's past year of commit activity
    R 6 CC-BY-4.0 3 1 0 Updated Oct 18, 2026
  • pftools3 Public

    A suite of tools to build and search generalized profiles

    sib-swiss/pftools3's past year of commit activity
    C 11 GPL-2.0 8 8 0 Updated Oct 16, 2026
  • sparql-examples Public

    A set of SPARQL examples that are used in different SIB resources

    sib-swiss/sparql-examples's past year of commit activity
    HTML 39 36 4 (1 issue needs help) 7 Updated Oct 15, 2026