Issues

• Error align local mode_exit type 2

  nellore/rail#88 · Filter by author gianmaz opened on Dec 3, 2018

• release new rail to include update to fastq-dump version

  nellore/rail#87 · Filter by author ChristopherWilks opened on Mar 15, 2018

• Stuck at Step 4/24: Align reads and segment them into readlets

  nellore/rail#85 · Filter by author undiagnosed opened on Dec 13, 2017
  4

• Provide rse_gene and rse_exon tables in the rail output

  nellore/rail#83 · Filter by author yevishere opened on Nov 30, 2017

• Supress intermediary bw option

  nellore/rail#82 · Filter by author yevishere opened on Nov 30, 2017

• Allow --tag specification

  nellore/rail#81 · Filter by author BenLangmead opened on Nov 30, 2017
  1

• Spurious error about existing bucket

  nellore/rail#75 · Filter by author BenLangmead opened on Nov 29, 2017

• Python subprocess OSError

  nellore/rail#69 · Filter by author davidwumdphd opened on Nov 11, 2017

• address make_temp_dir(common) in emr_simulator

  nellore/rail#49 · Filter by author nellore opened on Oct 1, 2016

• Normalize mean consistent with recount

  nellore/rail#48 · Filter by author lcolladotor opened on Sep 1, 2016

• add precision/recall tests to line.py

  nellore/rail#45 · Filter by author nellore opened on Jul 4, 2016

• make it obvious which log file has the error when dooplicity fails on a step in local/parallel modes

  nellore/rail#43 · Filter by author nellore opened on Jun 28, 2016
  1

• Unresolved ids in align_reads_delegate.py

  nellore/rail#41 · Filter by author BenLangmead opened on Jun 28, 2016

• Making this work with bioconda?

  nellore/rail#34 · Filter by author DCGenomics opened on May 9, 2016
  1

• missing isofrags.tar.gz in parallel mode (v0.2.3b)

  nellore/rail#33 · Filter by author jfear opened on Apr 18, 2016
  2

• partition pipeline so high-utilization steps can use different instance type from low-utilization steps

  nellore/rail#32 · Filter by author BenLangmead opened on Feb 17, 2016

• ideas for major feature additions in 0.3.0

  nellore/rail#28 · Filter by author nellore opened on Jul 27, 2015

• do something about 255'd mapqs

  nellore/rail#24 · Filter by author nellore opened on Apr 8, 2015

• add job flow resume feature

  nellore/rail#20 · Filter by author nellore opened on Mar 27, 2015
  1

• add uninstall

  nellore/rail#18 · Filter by author nellore opened on Mar 23, 2015

• use ncbi/ngs library to slurp in SRA reads

  enhancement
  nellore/rail#17 · Filter by author BenLangmead opened on Mar 5, 2015
  1

• explore using lz4 rather than gzip in parallel/local modes

  nellore/rail#16 · Filter by author nellore opened on Feb 27, 2015

• use latest gnu coreutils sort to increase speed in local/parallel mode; bundle with rail

  nellore/rail#15 · Filter by author nellore opened on Feb 21, 2015

• add counters for debugging

  nellore/rail#9 · Filter by author nellore opened on Oct 6, 2014
  1

• address consistency of mapqs; check unique.h of bt2 to figure this out

  nellore/rail#5 · Filter by author nellore opened on Aug 13, 2014