Issues

• HGDP called on T2T

  marbl/CHM13#112 · Filter by author kaustubhad opened on Sep 25, 2026

• [Structural Resolution] Mathematical Closure for T2T-CHM13v2.0 Centromeric Gap Invariants

  marbl/CHM13#111 · Filter by author GreyNexus-Global opened on Feb 19, 2026

• ID attribute on CDS maketh error while running liftoff

  marbl/CHM13#110 · Filter by author Yoonsung1203 opened on Nov 13, 2025
  1

• Best gnomAD reference to use

  marbl/CHM13#108 · Filter by author gevro opened on Aug 22, 2025

• PAR masked or unmasked for aligning PacBio?

  marbl/CHM13#106 · Filter by author QichenFU opened on Jun 26, 2025
  1

• Compressing UCSC GENCODEv35 CAT/Liftoff v2 annotation

  marbl/CHM13#104 · Filter by author Shians opened on May 1, 2025

• Chromosome sizes for epigenetics files differ from CHM13_v2.0 or are unavailable

  marbl/CHM13#102 · Filter by author chrarnold opened on Jan 27, 2025

• Questions about the source of T2T-CHM13 genetic map

  marbl/CHM13#96 · Filter by author lsaeric opened on Apr 25, 2024
  6

• Problems in chm13v2.0_RefSeq_Liftoff_v5.1.gff3

  marbl/CHM13#95 · Filter by author yeeus opened on Apr 20, 2024
  1

• Decoy Sequences

  marbl/CHM13#94 · Filter by author DrinnanSante opened on Mar 21, 2024
  1

• Missing parent gene entry for EPHA2

  marbl/CHM13#92 · Filter by author CodeCheong opened on Nov 20, 2023
  2

• mitochondrial genes

  marbl/CHM13#88 · Filter by author kenneditodd opened on Aug 18, 2023
  1

• pseudohomologous regions

  marbl/CHM13#86 · Filter by author ekg opened on Jul 31, 2023
  4

• Issue with preparing TxDB and GRanges object from GFF file

  marbl/CHM13#85 · Filter by author benjytan88 opened on Jul 14, 2023
  4

• Short read alignment to the genome

  marbl/CHM13#84 · Filter by author CodeCheong opened on Jun 12, 2023

• Is mapping the CHM13 from WGS a good idea right now?

  marbl/CHM13#78 · Filter by author fromtotw opened on Apr 20, 2023
  1

• is it a good time for a reference genome switch?

  marbl/CHM13#76 · Filter by author seru71 opened on Mar 13, 2023
  5

• [Feature request] Host a STAR index for this build

  marbl/CHM13#75 · Filter by author jolespin opened on Mar 9, 2023

• refSS regions of CHM13v2 ?

  marbl/CHM13#71 · Filter by author unique379r opened on Nov 4, 2022
  2

• Huge discrepancy in RepeatMasker lists between the UCSC version and the NCBI version

  marbl/CHM13#66 · Filter by author pliang64 opened on Aug 16, 2022
  14

• Extracting a subset of data from raw nanopore signal data

  marbl/CHM13#63 · Filter by author hasindu2008 opened on Jul 19, 2022
  5

• CADD scores for T2T-CHM13

  help wanted
  marbl/CHM13#60 · Filter by author xosxos opened on May 13, 2022
  2

• Problems in gff

  marbl/CHM13#52 · Filter by author mpovidlov1 opened on Apr 4, 2022
  6

• Imputation panels

  marbl/CHM13#41 · Filter by author gevro opened on Dec 26, 2021
  4

• Coordinate conversion in UCSC browser

  marbl/CHM13#40 · Filter by author gevro opened on Dec 25, 2021
  1