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@GMOD

Generic Model Organism Database Project

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  1. Chado Chado Public

    the GMOD database schema

    PLpgSQL 47 22

  2. jbrowse-components jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    TypeScript 297 88

  3. jbrowse jbrowse Public

    JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

    JavaScript 474 199

  4. Apollo Apollo Public

    Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

    Groovy 140 86

Repositories

Showing 10 of 137 repositories
  • gbz-haplotype-index Public

    Writes a companion haplotype index that names every walk in a gbz-base pangenome database

    GMOD/gbz-haplotype-index's past year of commit activity
    Rust 0 0 0 0 Updated Oct 10, 2026
  • jb2hubs Public

    Source code for the JBrowse 2 genome hubs webite and data processing scripts

    GMOD/jb2hubs's past year of commit activity
    TypeScript 0 0 12 0 Updated Oct 10, 2026
  • gfa-to-tabix Public

    Indexes a pangenome graph's GFA by genome coordinate, as two Tabix-indexed BED files

    GMOD/gfa-to-tabix's past year of commit activity
    Rust 0 Apache-2.0 0 0 0 Updated Oct 10, 2026
  • jbrowse-plugin-graphgenomeviewer Public
    GMOD/jbrowse-plugin-graphgenomeviewer's past year of commit activity
    TypeScript 0 GPL-3.0 0 0 0 Updated Oct 10, 2026
  • bandage-core Public

    Pangenome graph layout and drawing core utils: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer out

    GMOD/bandage-core's past year of commit activity
    TypeScript 1 GPL-3.0 0 0 0 Updated Oct 10, 2026
  • jbrowse-plugin-protein3d Public

    3D protein structure visualizer in jbrowse 2 - WIP

    GMOD/jbrowse-plugin-protein3d's past year of commit activity
    TypeScript 1 0 6 0 Updated Oct 10, 2026
  • jbrowse-plugin-list Public

    List of plugins for the JBrowse 2 plugin store.

    GMOD/jbrowse-plugin-list's past year of commit activity
    TypeScript 3 5 0 0 Updated Oct 10, 2026
  • ggtubemap Public

    Pangenome tube maps (sequenceTubeMap) as ggplot2 layers in R

    GMOD/ggtubemap's past year of commit activity
    JavaScript 0 0 0 0 Updated Oct 10, 2026
  • graph-stress-layout Public

    Stress layout of a sequence graph by walk-guided SGD in plain JS: a polyline per node, the reference backbone held straight

    GMOD/graph-stress-layout's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 10, 2026
  • gbz-base-js Public

    Pure TypeScript reader for gbz-base pangenome databases (.gbz.db) over HTTP range requests

    GMOD/gbz-base-js's past year of commit activity
    TypeScript 0 0 0 0 Updated Oct 10, 2026
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