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1. NBISweden/grave NBISweden/grave Public

   A Nextflow workflow for aligning, genotyping, and variant calling ancient or modern DNA against pangenome graphs

   Nextflow 3

2. nf-chain nf-chain Public

   Generate chain files and run genome to genome liftovers

   Nextflow 1

3. PaleovirologyLab/hi-fever PaleovirologyLab/hi-fever Public

   HI-FEVER: A Nextflow pipeline for the high-throughput discovery and annotation of endogenous viral elements

   Python 12 2

4. NBISweden/Earth-Biogenome-Project-pilot NBISweden/Earth-Biogenome-Project-pilot Public

   An assembly workflow for analysing data in the Earth Biogenome Project pilot project.

   Nextflow 19 13

5. NBISweden/NanoSeq NBISweden/NanoSeq Public

   Analysis software for Nanorate Sequencing (NanoSeq) experiments

   C++

6. Metagenomic-virus-host-prediction Metagenomic-virus-host-prediction Public

   Identify potential hosts of viruses in cohort metagenomic datasets

   Shell 4