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Prepare v1.2.0 - #3500

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dweindl merged 4 commits into
AMICI-dev:mainfrom
dweindl:release_1.2.0
Oct 29, 2026
Merged

dweindl merged 4 commits into
AMICI-dev:mainfrom
dweindl:release_1.2.0

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@dweindl dweindl commented Oct 28, 2026 •

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Prepares the v1.2.0 release: collects the changelog fragments into CHANGELOG.md using towncrier and curates the new section, bumps version.txt to 1.2.0, and regenerates the test models (only the version and commit hash changed).

The changelog section groups the fixes by topic, links each entry to its pull request, and lists deprecations separately, for which a new deprecation fragment type is added.

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@dweindl dweindl self-assigned this Oct 28, 2026
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dweindl marked this pull request as ready for review October 28, 2026 22:10
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dweindl requested a review from a team as a code owner October 28, 2026 22:11
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Codecov Report

❌ Patch coverage is 0% with 16 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.26%. Comparing base (71c6704) to head (44ddd03).

Files with missing lines Patch % Lines
models/model_calvetti_py/model_calvetti_py.h 0.00% 2 Missing ⚠️
models/model_dirac_py/model_dirac_py.h 0.00% 2 Missing ⚠️
models/model_events_py/model_events_py.h 0.00% 2 Missing ⚠️
...odel_jakstat_adjoint_py/model_jakstat_adjoint_py.h 0.00% 2 Missing ⚠️
...ls/model_nested_events_py/model_nested_events_py.h 0.00% 2 Missing ⚠️
models/model_neuron_py/model_neuron_py.h 0.00% 2 Missing ⚠️
models/model_robertson_py/model_robertson_py.h 0.00% 2 Missing ⚠️
models/model_steadystate_py/model_steadystate_py.h 0.00% 2 Missing ⚠️
Additional details and impacted files

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@@            Coverage Diff             @@
##             main    #3500      +/-   ##
==========================================
- Coverage   80.28%   80.26%   -0.03%     
==========================================
  Files         331      331              
  Lines       23420    23420              
  Branches     1631     1631              
==========================================
- Hits        18803    18797       -6     
- Misses       4611     4617       +6     
  Partials        6        6              
Flag Coverage Δ
cpp 74.85% <0.00%> (-0.03%) ⬇️
cpp_python 34.65% <0.00%> (ø)
petab 46.64% <ø> (ø)
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python 72.58% <0.00%> (-0.03%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
models/model_calvetti_py/model_calvetti_py.h 52.83% <0.00%> (ø)
models/model_dirac_py/model_dirac_py.h 52.28% <0.00%> (ø)
models/model_events_py/model_events_py.h 60.81% <0.00%> (ø)
...odel_jakstat_adjoint_py/model_jakstat_adjoint_py.h 64.51% <0.00%> (ø)
...ls/model_nested_events_py/model_nested_events_py.h 55.97% <0.00%> (ø)
models/model_neuron_py/model_neuron_py.h 66.46% <0.00%> (ø)
models/model_robertson_py/model_robertson_py.h 47.94% <0.00%> (ø)
models/model_steadystate_py/model_steadystate_py.h 56.84% <0.00%> (ø)

... and 2 files with indirect coverage changes

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dweindl and others added 4 commits October 29, 2026 10:25
Deprecations are listed in a separate section after the breaking
changes. Reclassify the `Model.t0_preeq()` deprecation, and the entity
ID handling and exact conservation laws as features.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Collect the changelog fragments using `towncrier build --version 1.2.0`,
curate the new section, and bump the version.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
@dweindl
dweindl merged commit b15fed8 into AMICI-dev:main Oct 29, 2026
28 of 29 checks passed
@dweindl
dweindl deleted the release_1.2.0 branch October 29, 2026 12:40
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