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10x Genomics

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https://10xgenomics.com
opensource@10xgenomics.com

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cellranger cellranger Public

10x Genomics Single Cell Analysis

Rust 480 105
loupeR loupeR Public

Convert Seurat objects to 10x Genomics Loupe files.

R 165 19
spaceranger spaceranger Public

Rust 25 2

Repositories

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Showing 10 of 79 repositories

spatialdata-io Public Forked from scverse/spatialdata-io

10XGenomics/spatialdata-io's past year of commit activity

Python 3 BSD-3-Clause 66 0 0 Updated Nov 12, 2026
infercnvpy Public Forked from scverse/infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

10XGenomics/infercnvpy's past year of commit activity

Python 0 BSD-3-Clause 33 0 1 Updated Nov 12, 2026
analysis_guides Public
10x Genomics analysis guides files

10XGenomics/analysis_guides's past year of commit activity

Jupyter Notebook 49 21 1 0 Updated Nov 11, 2026
orbit Public
Rust wrapper for STAR aligner

10XGenomics/orbit's past year of commit activity

C 23 MIT 4 0 6 Updated Nov 10, 2026
vartrix Public
Single-Cell Genotyping Tool

10XGenomics/vartrix's past year of commit activity

Rust 217 MIT 29 29 6 Updated Nov 9, 2026
bamtofastq Public
Convert 10x BAM files to the original FASTQs compatible with 10x pipelines

10XGenomics/bamtofastq's past year of commit activity

Rust 69 MIT 7 17 10 Updated Nov 3, 2026
scan-rs Public
Single-cell analysis methods in Rust

10XGenomics/scan-rs's past year of commit activity

Rust 36 2 1 1 Updated Nov 3, 2026
websummary Public
Generate an HTML report in Rust

10XGenomics/websummary's past year of commit activity

Rust 5 0 0 2 Updated Nov 3, 2026
simple_excel_writer Public Forked from outersky/simple_excel_writer
simple excel writer in Rust

10XGenomics/simple_excel_writer's past year of commit activity

Rust 0 Apache-2.0 28 0 0 Updated Nov 2, 2026
rust-shardio Public
Out-of-memory sorting of large datasets map / reduce style processing

10XGenomics/rust-shardio's past year of commit activity

Rust 48 MIT 5 3 3 Updated Oct 30, 2026

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