Issues

• python2 run_sate.py error

  sate-dev/sate-core#40 · Filter by author 1457634627 opened on Feb 7, 2021
  1

• Error from the begining with read()

  sate-dev/sate-core#39 · Filter by author lalalagartija opened on Aug 19, 2020

• Zombie processes on some files (not sure of cause)

  sate-dev/sate-core#36 · Filter by author brantfaircloth opened on May 22, 2015
  3

• Protein and DNA settings do not get updated in GUI

  sate-dev/sate-core#35 · Filter by author smirarab opened on Jan 30, 2014

• should check for taxa with non-overlapping gene content.

  sate-dev/sate-core#31 · Filter by author mtholder opened on May 22, 2012

• zombie processes when GUI is stopped

  Urgent
  sate-dev/sate-core#29 · Filter by author mtholder opened on May 22, 2012

• bootstrapping on final RAxML tree

  future improvement (not urgent)
  sate-dev/sate-core#28 · Filter by author mtholder opened on May 22, 2012

• export RAxML partitions file to the output dir

  feature request
  sate-dev/sate-core#27 · Filter by author mtholder opened on May 22, 2012
  1

• Preserving the order of sequences

  feature request
  sate-dev/sate-core#26 · Filter by author smirarab opened on May 22, 2012

• Prank is not given a guide tree inside sate

  future improvement (not urgent)
  sate-dev/sate-core#25 · Filter by author smirarab opened on May 22, 2012

• scrollable GUI

  feature requestGUI
  sate-dev/sate-core#22 · Filter by author mtholder opened on May 21, 2012

• feature request: tab cycling through gui elements

  feature requestGUI
  sate-dev/sate-core#21 · Filter by author mtholder opened on May 21, 2012

• virus protection software may require users to allow each bundled tool

  GUIUrgent
  sate-dev/sate-core#20 · Filter by author mtholder opened on May 21, 2012

• unicode support for input filepaths

  GUIneed to verify issueUrgent
  sate-dev/sate-core#18 · Filter by author mtholder opened on May 21, 2012
  2

• decomposition problem on unresolved edges

  sate-dev/sate-core#13 · Filter by author smirarab opened on Apr 16, 2012
  5

• Defaults are not set properly when run from command-line

  sate-dev/sate-core#12 · Filter by author smirarab opened on Apr 10, 2012

• postprocessing tree search

  fixed needs tests
  sate-dev/sate-core#11 · Filter by author mtholder opened on Mar 2, 2012
  1

• Interplay of max_subproblem_frac and max_subproblem_size

  sate-dev/sate-core#8 · Filter by author smirarab opened on Dec 14, 2011

• Assuming "mafft" is a python script

  future improvement (not urgent)
  sate-dev/sate-core#4 · Filter by author smirarab opened on Oct 22, 2011
  2

• Multiple threads and initial alignment

  fixed needs tests
  sate-dev/sate-core#3 · Filter by author smirarab opened on Oct 20, 2011
  1